This script calls EBSeq to find differentially expressed genes/transcripts in two conditions.
data_matrix_file: m by n matrix containing expected counts, m is the number of transcripts/genes, n is the number of total samples.
[--ngvector ngvector_file]: optional field. 'ngvector_file' is calculated by 'rsem-generate-ngvector'. Having this field is recommended for transcript data.
This script calls EBSeq to find differentially expressed genes/transcripts in two conditions.
data_matrix_file: m by n matrix containing expected counts, m is the number of transcripts/genes, n is the number of total samples.
[--ngvector ngvector_file]: optional field. 'ngvector_file' is calculated by 'rsem-generate-ngvector'. Having this field is recommended for transcript data.