if(line->start == 0){
flowFile >> numFlows; m->gobble(flowFile);
- scrapFlowFile << maxFlows << endl;
+ scrapFlowFile << numFlows << endl;
trimFlowFile << maxFlows << endl;
if(allFiles){
for(int i=0;i<thisBarcodePrimerComboFileNames.size();i++){
else if(type == "REVERSE"){
string oligoRC = reverseOligo(oligo);
revPrimer.push_back(oligoRC);
+ if (m->debug) { m->mothurOut("[DEBUG]: reverse oligos = " + oligoRC + ".\n"); }
}
else if(type == "BARCODE"){
oligosFile >> group;
primers[""] = 0;
primerNameVector.push_back("");
}
-
-
+
outFlowFileNames.resize(barcodeNameVector.size());
for(int i=0;i<outFlowFileNames.size();i++){
outFlowFileNames[i].assign(primerNameVector.size(), "");