vector<string> setParameters();
string getCommandName() { return "make.shared"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Make.shared"; }
string getDescription() { return "make a shared file from a list and group file"; }
bool isValidGroup(string, vector<string>);
int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
int ListGroupSameSeqs(vector<string>&, SharedListVector*);
- int createSharedFromListGroup(string);
- int createSharedFromBiom(string);
+ int createSharedFromListGroup();
+ int createSharedFromBiom();
string getTag(string&);
vector<string> readRows(string, int&);
int getDims(string, int&, int&);