+++ /dev/null
-/*
- * reportfile.cpp
- * Mothur
- *
- * Created by Pat Schloss on 12/19/10.
- * Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "mothurout.h"
-#include "reportfile.h"
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(){
- try {
- m = MothurOut::getInstance();
- }
- catch(exception& e) {
- m->errorOut(e, "ReportFile", "ReportFile");
- exit(1);
- }
-}
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile, string repFileName){
- try {
- m = MothurOut::getInstance();
-
- m->openInputFile(repFileName, repFile);
- m->getline(repFile);
- }
- catch(exception& e) {
- m->errorOut(e, "ReportFile", "ReportFile");
- exit(1);
- }
-}
-
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile){
- try {
-
- m = MothurOut::getInstance();
-
- repFile >> queryName;
- repFile >> queryLength;
- repFile >> templateName;
- repFile >> templateLength;
- repFile >> searchMethod;
- repFile >> dummySearchScore;
- repFile >> alignmentMethod;
- repFile >> queryStart;
- repFile >> queryEnd;
- repFile >> templateStart;
- repFile >> templateEnd;
- repFile >> pairwiseAlignmentLength;
- repFile >> gapsInQuery;
- repFile >> gapsInTemplate;
- repFile >> longestInsert;
- repFile >> simBtwnQueryAndTemplate;
-
- if(dummySearchScore != "nan"){
- istringstream stream(dummySearchScore);
- stream >> searchScore;
- }
- else{
- searchScore = 0;
- }
-
- m->gobble(repFile);
- }
- catch(exception& e) {
- m->errorOut(e, "ReportFile", "ReportFile");
- exit(1);
- }
-
-}
-
-/**************************************************************************************************/