vector<string> setParameters();
string getCommandName() { return "remove.rare"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Remove.rare"; }
string getDescription() { return "removes rare sequences from a sabund, rabund, shared or list and group file"; }
int processRabund();
int processList();
int processShared();
- int processLookup(vector<SharedRAbundVector*>&, ofstream&);
+ int processLookup(vector<SharedRAbundVector*>&);
};