void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
void updateForwardMap(vector<vector<int> >&, int, int, int);
void updateReverseMap(vector<vector<int> >&, int, int, int);
- void setName(string n) { seqName = n; }
+ void setName(string n);
void setScores(vector<int> qs) { qScores = qs; seqLength = qScores.size(); }
-
+ vector<int> getScores() { return qScores; }
private:
string seqName;
int seqLength;
+
+ string getSequenceName(ifstream&);
};
/**************************************************************************************************/