string blastfile, method, namefile, countfile, overlapFile, distFile, outputDir;
ofstream sabundFile, rabundFile, listFile;
double cutoff;
- float penalty;
+ float penalty, adjust;
int precision, length, precisionLength;
- bool abort, minWanted, hclusterWanted, merge, hard;
+ bool abort, minWanted, hclusterWanted, merge, hard, cutoffSet;
void printData(ListVector*);
ListVector* mergeOPFs(map<string, int>, float);