+++ /dev/null
-#ifndef HEATMAPCOMMAND_H
-#define HEATMAPCOMMAND_H
-
-/*
- * heatmapcommand.h
- * Mothur
- *
- * Created by Sarah Westcott on 3/25/09.
- * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "sharedlistvector.h"
-#include "heatmap.h"
-#include "rabundvector.hpp"
-
-
-class HeatMapCommand : public Command {
-
-public:
- HeatMapCommand(string);
- HeatMapCommand();
- ~HeatMapCommand(){}
-
- vector<string> setParameters();
- string getCommandName() { return "heatmap.bin"; }
- string getCommandCategory() { return "OTU-Based Approaches"; }
- string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Heatmap.bin"; }
- string getDescription() { return "generate a heatmap where the color represents the relative abundanceof an OTU"; }
-
-
- int execute();
- void help() { m->mothurOut(getHelpString()); }
-
-
-private:
- InputData* input;
- RAbundVector* rabund;
- vector<SharedRAbundVector*> lookup;
- vector<SharedRAbundFloatVector*> lookupFloat;
- HeatMap* heatmap;
-
- bool abort, allLines;
- set<string> labels; //holds labels to be used
- string format, groups, sorted, scale, label, outputDir, sharedfile, relabundfile, listfile, rabundfile, sabundfile, inputfile;
- vector<string> Groups, outputNames;
- int numOTU, fontSize;
-
-
-};
-
-#endif
-