private:
- string filename, listfile, sabundfile, inputfile, format, outputDir;
+ string filename, listfile, sabundfile, inputfile, format, outputDir, countfile;
ofstream out;
- InputData* input;
- RAbundVector* rabund;
vector<string> outputNames;
bool abort, allLines, sorted;
set<string> labels; //holds labels to be used
string label;
-
+ int processList(ofstream& out);
+ int createRabund(CountTable& ct, ListVector*& list, RAbundVector*& rabund);
};
#endif