else if (countfile == "not open") { abort = true; countfile = ""; }
else {
m->setCountTableFile(countfile);
- ct.readTable(countfile, true);
+ ct.readTable(countfile, true, false);
if (ct.hasGroupInfo()) { hasGroups = true; }
}
CountTable thisCt;
if (countfile != "") {
- thisCt.readTable(countfile, true);
+ thisCt.readTable(countfile, true, false);
if (tempGroup != "noGroup") { out2 << "Representative_Sequence\ttotal\t" << tempGroup << endl; }
}
CountTable thisCt;
if (countfile != "") {
- thisCt.readTable(countfile, true);
+ thisCt.readTable(countfile, true, false);
if (tempGroup != "noGroup") { out2 << "Representative_Sequence\ttotal\t" << tempGroup << endl; }
}