Dist* distCalculator;
SequenceDB alignDB;
- string countends, output, fastafile, calc, outputDir, oldfastafile, column;
+ string countends, output, fastafile, calc, outputDir, oldfastafile, column, compress;
+
int processors, numNewFasta;
float cutoff;
map<int, int> processIDS; //end line, processid