#include "listvector.hpp"
#include "rabundvector.hpp"
#include "nameassignment.hpp"
+#include "counttable.h"
/*
* clusterclassic.h
public:
ClusterClassic(float, string, bool);
int readPhylipFile(string, NameAssignment*);
+ int readPhylipFile(string, CountTable*);
void update(double&);
double getSmallDist() { return smallDist; }
int getNSeqs() { return nseqs; }
struct colDist {
int col;
int row;
- double dist;
+ float dist;
colDist(int r, int c, double d) : row(r), col(c), dist(d) {}
};
RAbundVector* rabund;
ListVector* list;
- vector< vector<double> > dMatrix;
+ vector< vector<float> > dMatrix;
//vector<colDist> rowSmallDists;
int smallRow;