vector<string> setParameters();
string getCommandName() { return "clearcut"; }
string getCommandCategory() { return "Hypothesis Testing"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "Sheneman L, Evans J, Foster JA (2006). Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 22: 2823-4. \nhttp://www.mothur.org/wiki/Clearcut"; }
string getDescription() { return "create a tree from a fasta or phylip file"; }