m->mothurOut("Classifying sequences from " + fastaFileNames[s] + " ..." ); m->mothurOutEndLine();
- string baseTName = taxonomyFileName;
+ string baseTName = m->getSimpleName(taxonomyFileName);
if (taxonomyFileName == "saved") {baseTName = rdb->getSavedTaxonomy(); }
//set rippedTaxName to