SequenceCountParser* cparser;
if (pDataArray->hasCount) {
CountTable* ct = new CountTable();
- ct->readTable(pDataArray->namefile);
+ ct->readTable(pDataArray->namefile, true);
cparser = new SequenceCountParser(pDataArray->fastafile, *ct);
delete ct;
}else {
chimeraFile << j << '\t' << sequences[j].seqName << "\t0\t0\tNull\t0\t0\t0\tNull\tNull\t0.0\t0.0\t0.0\t0\t0\t0\t0.0\t0.0\tgood" << endl;
}
//report progress
- if((j+1) % 100 == 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(j+1) + "\n"); }
+ if((j+1) % 100 == 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(j+1) + "\n"); }
}
- if((numSeqs) % 100 != 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs) + "\n"); }
+ if((numSeqs) % 100 != 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs) + "\n"); }
chimeraFile.close();
accnosFile.close();