vector<string> setParameters();
string getCommandName() { return "amova"; }
string getCommandCategory() { return "Hypothesis Testing"; }
+
string getHelpString();
- string getCitation() { return "Anderson MJ (2001). A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32-46.\nhttp://www.mothur.org/wiki/Amova"; }
+ string getOutputPattern(string);
+ string getCitation() { return "Anderson MJ (2001). A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32-46.\nhttp://www.mothur.org/wiki/Amova"; }
string getDescription() { return "analysis of molecular variance"; }
int execute();
map<string, vector<int> > getRandomizedGroups(map<string, vector<int> >);
bool abort;
- vector<string> outputNames;
+ vector<string> outputNames, Sets;
string outputDir, inputDir, designFileName, phylipFileName;
GroupMap* designMap;