1 #ifndef VALIDPARAMETERS_H
2 #define VALIDPARAMETERS_H
8 * Created by Sarah Westcott on 1/5/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
16 //This class contains a list of all valid parameters in Mothur.
17 //It has a function which will tell you if your parameter is valid.
18 //When adding a new parameter you must add it to the valid list in the class constructor.
21 class ValidParameters {
26 bool isValidParameter(string);
27 bool isValidParameter(string, string, string);
28 vector <string> addParameters(string[], int);
29 void initCommandParameters();
30 void initParameterRanges();
33 map<string, string> readdist;
34 map<string, string> readotu;
35 map<string, string> readtree;
36 map<string, string> cluster;
37 map<string, string> deconvolute;
38 map<string, string> parsimony;
39 map<string, string> collectsingle;
40 map<string, string> collectshared;
41 map<string, string> rarefactsingle;
42 map<string, string> rarefactshared;
43 map<string, string> summarysingle;
44 map<string, string> summaryshared;
45 map<string, string> unifracweighted;
46 map<string, string> unifracunweighted;
47 map<string, string> libshuff;
48 map<string, string> heatmap;
50 map<string, string>::iterator it;
51 map<string, vector<string> > commandParameters;
52 map<string, vector<string> > parameterRanges;