11 T(Windex_SetSeqIndex)
\r
18 T(Windex_UniqueWordsAlloc)
\r
19 T(Windex_UniqueWords)
\r
25 T(EditDist_BlockTarget)
\r
56 T(U_SetWordCountsHash)
\r
60 T(U_SetHotHitsScores)
\r
74 T(WF_GetCommonWordCount)
\r
76 T(GetFractIdGivenPath)
\r
77 T(WX_GetUniqueWords)
\r
98 T(UngappedBlast2Hit)
\r
114 T(XlatSeqToLetters)
\r
126 T(SWAT_AlignTarget)
\r
127 T(SWAT_CacheQueryNW)
\r
128 T(SWAT_AlignTargetNW)
\r
130 T(LocalUngappedHitToAD)
\r
131 T(LocalGappedHitToAD)
\r
136 T(ChainCov_EndQuery)
\r
137 T(ChainCov_DoTarget)
\r
140 T(UngappedExtendLeft)
\r
141 T(UngappedExtendRight)
\r
169 T(Search_InnerLoop_2)
\r