8 * Created by Kathryn Iverson on June 27, 2011.
9 * Copyright 2011 Schloss Lab. All rights reserved.
13 #include "mothurout.h"
19 TrialSwap2(){ m = MothurOut::getInstance(); };
22 double calc_pvalue_lessthan (vector<double>, double);
23 double calc_pvalue_greaterthan (vector<double>, double);
24 int swap_checkerboards (vector<vector<int> > &);
25 int calc_combo (vector<vector<int> > &);
26 double calc_vratio (vector<int>, vector<int>);
27 int calc_checker (vector<vector<int> > &,vector<int>);
28 double calc_c_score (vector<vector<int> > &,vector<int>);
30 int sim1 (vector<vector<int> > &);
31 void sim2(vector<vector<int> >&);
32 int sim2plus(vector<int>, vector<vector<int> > &);
33 void sim3(vector<vector<int> > &);
34 int sim4(vector<int>, vector<int>, vector<vector<int> > &);
35 int sim5(vector<int>, vector<int>, vector<vector<int> > &);
36 int sim6(vector<int>, vector<vector<int> > &);
37 int sim7(vector<int>, vector<vector<int> > &);
38 int sim8(vector<int>, vector<int>, vector<vector<int> > &);
39 int transpose_matrix (vector<vector<int> > &, vector<vector<int> > &);
40 int update_row_col_totals(vector<vector<int> > &, vector<int>&, vector<int>&);
46 double t_test (double, int, double, vector<double>);
47 int print_matrix(vector<vector<int> > &, int, int);