1 #ifndef Mothur_treereader_h
2 #define Mothur_treereader_h
8 // Created by Sarah Westcott on 4/11/12.
9 // Copyright (c) 2012 Schloss Lab. All rights reserved.
12 #include "mothurout.h"
19 TreeReader(string tf);
20 TreeReader(string tf, string gf);
21 TreeReader(string tf, string gf, string nf);
24 vector<Tree*> getTrees() { return trees; }
25 map<string, string> getNames() { return nameMap; } //dups -> unique
26 map<string, string> getNameMap() { return names; } //unique -> dups list
33 map<string, string> nameMap; //dupName -> uniqueName
34 map<string, string> names;
36 string treefile, groupfile, namefile;