5 * Created by Sarah Westcott on 1/23/09.
6 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 /****************************************************************/
23 /****************************************************************/
24 void Node::setName(string Name) { name = Name; }
25 /****************************************************************/
26 void Node::setGroup(string groups) { group =groups; }
27 /****************************************************************/
28 void Node::setBranchLength(float l) { branchLength = l; }
29 /****************************************************************/
30 void Node::setParent(int p) { parent = p; }
31 /****************************************************************/
32 void Node::setIndex(int i) { vectorIndex = i; }
33 /****************************************************************/
34 void Node::setChildren(int lc, int rc) { lchild = lc; rchild = rc; } //leftchild, rightchild
35 /****************************************************************/
36 string Node::getName() { return name; }
37 /****************************************************************/
38 string Node::getGroup() { return group; }
39 /****************************************************************/
40 float Node::getBranchLength() { return branchLength; }
41 /****************************************************************/
42 int Node::getParent() { return parent; }
43 /****************************************************************/
44 int Node::getLChild() { return lchild; }
45 /****************************************************************/
46 int Node::getRChild() { return rchild; }
47 /****************************************************************/
48 int Node::getIndex() { return vectorIndex; }
49 /****************************************************************/
50 //to be used by printTree in the Tree class to print the leaf info
51 void Node::printNode() {
53 cout << parent << ' ' << lchild << ' ' << rchild << ' ' << group;
54 //there is a branch length
55 if (branchLength != -1) {
56 cout << ' ' << setprecision(4) << branchLength;
59 map<string, int>::iterator it;
60 for(it=pGroups.begin();it!=pGroups.end();it++){
61 cout << ' ' << it->first << ':' << it->second;
64 for(it=pcount.begin();it!=pcount.end();it++){
65 cout << ' ' << it->first << ':' << it->second;
72 cout << "Standard Error: " << e.what() << " has occurred in the Node class Function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
76 cout << "An unknown error has occurred in the Node class function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
80 /****************************************************************/