6 #include "Transcripts.h"
7 #include "BamConverter.h"
11 char tiF[STRLEN], chr_list[STRLEN];
12 Transcripts transcripts;
14 int main(int argc, char* argv[]) {
16 printf("Usage: rsem-tbam2gbam reference_name unsorted_transcript_bam_input genome_bam_output\n");
20 sprintf(tiF, "%s.ti", argv[1]);
21 sprintf(chr_list, "%s.chrlist", argv[1]);
22 transcripts.readFrom(tiF);
24 printf("Start converting:\n");
25 BamConverter bc(argv[2], argv[3], chr_list, transcripts);
27 printf("Genome bam file is generated!\n");