1 /******************************************************************
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2 Copyright 2006 by Michael Farrar. All rights reserved.
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3 This program may not be sold or incorporated into a commercial product,
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4 in whole or in part, without written consent of Michael Farrar. For
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5 further information regarding permission for use or reproduction, please
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6 contact: Michael Farrar at farrar.michael@gmail.com.
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7 *******************************************************************/
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10 Written by Michael Farrar, 2006.
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11 Please send bug reports and/or suggestions to farrar.michael@gmail.com.
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14 #ifndef INCLUDE_SWWOZNIAK_H
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15 #define INCLUDE_SWWOZNIAK_H
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18 #include "fastalib.h"
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20 #define MATRIX_ROW_SIZE 32
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23 swWozniakInit (unsigned char *querySeq,
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25 signed char *matrix);
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29 swWozniakScan (unsigned char *querySeq,
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33 SEARCH_OPTIONS *options,
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34 SCORE_LIST *scores);
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37 swWozniakComplete (SW_DATA *pSwData);
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40 #endif /* INCLUDE_SWWOZNIAK_H */
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