1 #ifndef __SAM_HEADER_H__
2 #define __SAM_HEADER_H__
8 void *sam_header_parse2(const char *headerText);
9 void *sam_header_merge(int n, const void **dicts);
10 void sam_header_free(void *header);
11 char *sam_header_write(const void *headerDict); // returns a newly allocated string
15 const char *key, *val;
16 void *iter = sam_header_parse2(bam->header->text);
17 while ( iter = sam_header_key_val(iter, "RG","ID","SM" &key,&val) ) printf("%s\t%s\n", key,val);
19 void *sam_header2key_val(void *iter, const char type[2], const char key_tag[2], const char value_tag[2], const char **key, const char **value);
20 char **sam_header2list(const void *_dict, char type[2], char key_tag[2], int *_n);
25 const char *tags[] = {"SN","LN","UR","M5",NULL};
26 void *dict = sam_header_parse2(bam->header->text);
27 char **tbl = sam_header2tbl_n(h->dict, "SQ", tags, &n);
31 if ( tbl[4*i+j] ) printf("\t%s", tbl[4*i+j]);
37 char **sam_header2tbl_n(const void *dict, const char type[2], const char *tags[], int *n);
39 void *sam_header2tbl(const void *dict, char type[2], char key_tag[2], char value_tag[2]);
40 const char *sam_tbl_get(void *h, const char *key);
41 int sam_tbl_size(void *h);
42 void sam_tbl_destroy(void *h);