1 #ifndef REVERSECOMMAND_H
2 #define REVERSECOMMAND_H
8 * Created by Pat Schloss on 6/6/09.
9 * Copyright 2009 Patrick D. Schloss. All rights reserved.
13 #include "command.hpp"
15 class ReverseSeqsCommand : public Command {
17 ReverseSeqsCommand(string);
19 ~ReverseSeqsCommand() {}
21 vector<string> setParameters();
22 string getCommandName() { return "reverse.seqs"; }
23 string getCommandCategory() { return "Sequence Processing"; }
25 string getHelpString();
26 string getOutputPattern(string);
27 string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
28 string getDescription() { return "outputs a fasta file containing the reverse-complements"; }
32 void help() { m->mothurOut(getHelpString()); }
37 string fastaFileName, qualFileName, outputDir;
38 vector<string> outputNames;