8 * Created by Pat Schloss on 7/12/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
15 #include "mothurout.h"
17 /**************************************************************************************************/
22 ReportFile(ifstream&);
23 ReportFile(ifstream&, string);
25 string getQueryName() { return queryName; }
26 string getTemplateName() { return templateName; }
27 string getSearchMethod() { return searchMethod; }
28 string getAlignmentMethod() { return alignmentMethod; }
30 int getQueryLength() { return queryLength; }
31 int getTemplateLength() { return templateLength; }
32 int getQueryStart() { return queryStart; }
33 int getQueryEnd() { return queryEnd; }
34 int getTemplateStart() { return templateStart; }
35 int getTemplateEnd() { return templateEnd; }
36 int getPairwiseAlignmentLength() { return pairwiseAlignmentLength; }
37 int getGapsInQuery() { return gapsInQuery; }
38 int getGapsInTemplate() { return gapsInTemplate; }
39 int getLongestInsert() { return longestInsert; }
41 float getSearchScore() { return searchScore; }
42 float getSimBtwnQueryAndTemplate() { return simBtwnQueryAndTemplate; }
49 string queryName, templateName, searchMethod, alignmentMethod;
50 int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
51 float searchScore, simBtwnQueryAndTemplate;
55 /**************************************************************************************************/