8 * Created by Pat Schloss on 7/12/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
15 /**************************************************************************************************/
20 ReportFile(ifstream&);
21 ReportFile(ifstream&, string);
23 string getQueryName() { return queryName; }
24 string getTemplateName() { return templateName; }
25 string getSearchMethod() { return searchMethod; }
26 string getAlignmentMethod() { return alignmentMethod; }
28 int getQueryLength() { return queryLength; }
29 int getTemplateLength() { return templateLength; }
30 int getQueryStart() { return queryStart; }
31 int getQueryEnd() { return queryEnd; }
32 int getTemplateStart() { return templateStart; }
33 int getTemplateEnd() { return templateEnd; }
34 int getPairwiseAlignmentLength() { return pairwiseAlignmentLength; }
35 int getGapsInQuery() { return gapsInQuery; }
36 int getGapsInTemplate() { return gapsInTemplate; }
37 int getLongestInsert() { return longestInsert; }
39 float getSearchScore() { return searchScore; }
40 float getSimBtwnQueryAndTemplate() { return simBtwnQueryAndTemplate; }
47 string queryName, templateName, searchMethod, alignmentMethod, dummySearchScore;
48 int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
49 float searchScore, simBtwnQueryAndTemplate;
53 /**************************************************************************************************/