1 #ifndef REMOVESEQSCOMMAND_H
2 #define REMOVESEQSCOMMAND_H
8 * Created by Sarah Westcott on 7/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
15 class RemoveSeqsCommand : public Command {
19 RemoveSeqsCommand(string);
21 ~RemoveSeqsCommand(){}
22 vector<string> getRequiredParameters();
23 vector<string> getValidParameters();
24 vector<string> getRequiredFiles();
25 map<string, vector<string> > getOutputFiles() { return outputTypes; }
31 string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
33 vector<string> outputNames;
34 map<string, vector<string> > outputTypes;