1 #ifndef REMOVERARECOMMAND_H
2 #define REMOVERARECOMMAND_H
8 * Created by westcott on 1/21/11.
9 * Copyright 2011 Schloss Lab. All rights reserved.
14 #include "command.hpp"
15 #include "listvector.hpp"
16 #include "globaldata.hpp"
18 class RemoveRareCommand : public Command {
22 RemoveRareCommand(string);
24 ~RemoveRareCommand(){}
25 vector<string> getRequiredParameters();
26 vector<string> getValidParameters();
27 vector<string> getRequiredFiles();
28 map<string, vector<string> > getOutputFiles() { return outputTypes; }
33 GlobalData* globaldata;
34 string sabundfile, rabundfile, sharedfile, groupfile, listfile, outputDir, groups, label;
37 vector<string> outputNames, Groups;
39 map<string, vector<string> > outputTypes;
45 int processLookup(vector<SharedRAbundVector*>&, ofstream&);