1 #ifndef READTREECOMMAND_H
2 #define READTREECOMMAND_H
8 * Created by Sarah Westcott on 1/23/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
18 class ReadTreeCommand : public Command {
20 ReadTreeCommand(string);
21 ReadTreeCommand() { abort = true; calledHelp = true; }
24 vector<string> setParameters() { return outputNames; } //dummy doesn't really do anything
25 string getCommandName() { return "read.tree"; }
26 string getCommandCategory() { return "Hidden"; }
27 string getHelpString() { return "This command is no longer available. You can provide your files directly to the downstream commands like unifrac.unweighted."; }
28 string getCitation() { return "http://www.mothur.org/wiki/Read.tree"; }
29 string getDescription() { return "read.tree"; }
32 void help() { m->mothurOut(getHelpString()); }
37 string filename, treefile, groupfile, namefile;
39 map<string, string> nameMap;
40 vector<string> outputNames;