1 #ifndef RAREFACTSHAREDCOMMAND_H
2 #define RAREFACTSHAREDCOMMAND_H
4 * rarefactsharedcommand.h
7 * Created by Sarah Westcott on 1/6/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include "command.hpp"
13 #include "inputdata.h"
16 #include "validcalculator.h"
18 class RareFactSharedCommand : public Command {
21 RareFactSharedCommand(string);
22 RareFactSharedCommand();
23 ~RareFactSharedCommand() {}
25 vector<string> setParameters();
26 string getCommandName() { return "rarefaction.shared"; }
27 string getCommandCategory() { return "OTU-Based Approaches"; }
28 string getHelpString();
31 void help() { m->mothurOut(getHelpString()); }
36 vector<SharedRAbundVector*> lookup;
39 vector<Display*> rDisplays;
44 bool abort, allLines, jumble;
45 set<string> labels; //holds labels to be used
46 string label, calc, groups, outputDir, sharedfile;
47 vector<string> Estimators, Groups, outputNames;