1 #ifndef RAREFACTCOMMAND_H
2 #define RAREFACTCOMMAND_H
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include "command.hpp"
13 #include "ordervector.hpp"
14 #include "inputdata.h"
18 #include "validcalculator.h"
23 class RareFactCommand : public Command {
26 RareFactCommand(string);
29 vector<string> getRequiredParameters();
30 vector<string> getValidParameters();
31 vector<string> getRequiredFiles();
32 map<string, vector<string> > getOutputFiles() { return outputTypes; }
37 GlobalData* globaldata;
38 vector<Display*> rDisplays;
42 ValidCalculators* validCalculator;
44 int nIters, abund, processors;
48 set<string> labels; //holds labels to be used
50 vector<string> Estimators;
51 vector<string> inputFileNames, outputNames;
52 vector<string> groups;
53 map<string, vector<string> > outputTypes;
56 vector<string> parseSharedFile(string);