1 #ifndef PHYLOTYPECOMMAND_H
2 #define PHYLOTYPECOMMAND_H
9 * Created by westcott on 11/20/09.
10 * Copyright 2009 Schloss Lab. All rights reserved.
14 #include "taxonomyequalizer.h"
15 #include "command.hpp"
17 /*************************************************************************/
19 class PhylotypeCommand : public Command {
22 PhylotypeCommand(string);
29 string taxonomyFileName, label, outputDir, namefile;
30 set<string> labels; //holds labels to be used
32 map<string, string> namemap;
34 map<int, int> currentNodes;
35 map<int, int> parentNodes;
36 map<int, int>::iterator itCurrent;
43 /*************************************************************************/