9 * Created by Sarah Westcott on 1/26/09.
10 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
14 #include "treecalculator.h"
16 #include "globaldata.hpp"
18 /***********************************************************************/
20 class Parsimony : public TreeCalculator {
23 Parsimony(TreeMap* t) : tmap(t) {};
25 EstOutput getValues(Tree*, int, string);
26 //EstOutput getValues(Tree*, string, string) { return data; }
32 linePair(int i, int j) : start(i), num(j) {}
34 vector<linePair> lines;
36 GlobalData* globaldata;
42 EstOutput driver(Tree*, vector< vector<string> >, int, int);
43 EstOutput createProcesses(Tree*, vector< vector<string> >);
46 /***********************************************************************/