9 * Created by Pat Schloss on 8/12/11.
10 * Copyright 2011 Patrick D. Schloss. All rights reserved.
14 #include "mothurout.h"
16 /**************************************************************************************************/
20 correctDist(string, int);
24 int addSeq(string, string);
29 int getSequences(string);
30 vector<int> fixSequence(string);
32 int driver(int, int, string);
33 int createProcess(string);
35 double getDist(vector<int>&, vector<int>&);
36 int getLastMatch(char, vector<vector<char> >&, int, int, vector<int>&, vector<int>&);
38 vector<vector<double> > correctMatrix;
40 vector<vector<int> > sequences;
49 /**************************************************************************************************/