1 #ifndef MANTELCOMMAND_H
2 #define MANTELCOMMAND_H
8 * Created by westcott on 2/9/11.
9 * Copyright 2011 Schloss Lab. All rights reserved.
13 #include "command.hpp"
14 #include "linearalgebra.h"
16 class MantelCommand : public Command {
18 MantelCommand(string);
21 vector<string> getRequiredParameters();
22 vector<string> getValidParameters();
23 vector<string> getRequiredFiles();
24 map<string, vector<string> > getOutputFiles() { return outputTypes; }
30 string phylipfile1, phylipfile2, outputDir, method;
34 vector<string> outputNames;
35 map<string, vector<string> > outputTypes;