1 #ifndef MAKEGROUPCOMMAND_H
2 #define MAKEGROUPCOMMAND_H
8 * Created by westcott on 5/7/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
13 #include "command.hpp"
15 class MakeGroupCommand : public Command {
18 MakeGroupCommand(string);
22 vector<string> setParameters();
23 string getCommandName() { return "make.group"; }
24 string getCommandCategory() { return "General"; }
26 string getHelpString();
27 string getOutputPattern(string);
28 string getCitation() { return "http://www.mothur.org/wiki/Make.group"; }
29 string getDescription() { return "creates a group file"; }
32 void help() { m->mothurOut(getHelpString()); }
36 string fastaFileName, groups, outputDir, filename, output;
37 vector<string> fastaFileNames;
38 vector<string> groupsNames, outputNames;