5 * Created by Sarah Westcott on 1/2/09.
6 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
10 #include "helpcommand.h"
12 //**********************************************************************************************************************
14 HelpCommand::HelpCommand(string option) {
15 validCommands = CommandFactory::getInstance();
17 //**********************************************************************************************************************
18 int HelpCommand::execute(){
20 validCommands->printCommands(cout);
21 m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
23 m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
28 m->errorOut(e, "HelpCommand", "execute");
32 //**********************************************************************************************************************/