1 #ifndef HEATMAPSIMCOMMAND_H
2 #define HEATMAPSIMCOMMAND_H
8 * Created by Sarah Westcott on 6/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
14 #include "inputdata.h"
16 #include "validcalculator.h"
17 #include "heatmapsim.h"
21 class HeatMapSimCommand : public Command {
24 HeatMapSimCommand(string);
30 GlobalData* globaldata;
33 vector<SharedRAbundVector*> lookup;
34 vector<Calculator*> heatCalculators;
35 ValidCalculators* validCalculator;
38 map<string, string> parameters;
39 map<string, string>::iterator it;
41 set<int> lines; //hold lines to be used
42 set<string> labels; //holds labels to be used
43 string format, groups, line, label, calc;
44 vector<string> Estimators, Groups;