1 #ifndef GETSHAREDOTUCOMMAND_H
2 #define GETSHAREDOTUCOMMAND_H
5 * getsharedotucommand.h
8 * Created by westcott on 9/22/09.
9 * Copyright 2009 Schloss Lab. All rights reserved.
13 #include "command.hpp"
14 #include "listvector.hpp"
15 #include "sequence.hpp"
17 #include "globaldata.hpp"
19 //**********************************************************************************************************************
20 class GetSharedOTUCommand : public Command {
24 GetSharedOTUCommand(string);
25 ~GetSharedOTUCommand();
31 GlobalData* globaldata;
36 string fastafile, label, groups, listfile, groupfile, output;
38 vector<string> Groups;
39 map<string, string> groupFinder;
40 map<string, string>::iterator it;
41 vector<Sequence> seqs;
43 void process(ListVector*);
46 //**********************************************************************************************************************