2 // getmimarkspackagecommand.h
5 // Created by Sarah Westcott on 3/25/14.
6 // Copyright (c) 2014 Schloss Lab. All rights reserved.
9 #ifndef Mothur_getmimarkspackagecommand_h
10 #define Mothur_getmimarkspackagecommand_h
12 #include "command.hpp"
15 /**************************************************************************************************/
17 class GetMIMarksPackageCommand : public Command {
19 GetMIMarksPackageCommand(string);
20 GetMIMarksPackageCommand();
21 ~GetMIMarksPackageCommand(){}
23 vector<string> setParameters();
24 string getCommandName() { return "get.mimarkspackage"; }
25 string getCommandCategory() { return "Sequence Processing"; }
27 string getOutputPattern(string);
28 string getHelpString();
29 string getCitation() { return "http://www.mothur.org/wiki/get.mimarkspackage"; }
30 string getDescription() { return "create blank mimarks package form for sra command"; }
33 void help() { m->mothurOut(getHelpString()); }
36 bool abort, requiredonly;
37 string oligosfile, groupfile, package, inputfile, file, inputDir;
39 vector<string> outputNames, Groups;
44 /**************************************************************************************************/