1 #ifndef GETGROUPSCOMMAND_H
2 #define GETGROUPSCOMMAND_H
8 * Created by westcott on 11/10/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "command.hpp"
17 class GetGroupsCommand : public Command {
21 GetGroupsCommand(string);
24 vector<string> getRequiredParameters();
25 vector<string> getValidParameters();
26 vector<string> getRequiredFiles();
27 map<string, vector<string> > getOutputFiles() { return outputTypes; }
33 string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups;
35 vector<string> outputNames, Groups;
36 map<string, vector<string> > outputTypes;