5 // Created by Sarah Westcott on 1/28/13.
6 // Copyright (c) 2013 Schloss Lab. All rights reserved.
9 #ifndef Mothur_getdistscommand_h
10 #define Mothur_getdistscommand_h
12 #include "command.hpp"
14 class GetDistsCommand : public Command {
18 GetDistsCommand(string);
22 vector<string> setParameters();
23 string getCommandName() { return "get.dists"; }
24 string getCommandCategory() { return "General"; }
26 string getHelpString();
27 string getOutputPattern(string);
28 string getCitation() { return "http://www.mothur.org/wiki/Get.dists"; }
29 string getDescription() { return "gets distances from a phylip or column file related to groups or sequences listed in an accnos file"; }
33 void help() { m->mothurOut(getHelpString()); }
38 string accnosfile, phylipfile, columnfile, outputDir;
40 vector<string> outputNames;