1 #ifndef ERRORCHECKING_H
2 #define ERRORCHECKING_H
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "globaldata.hpp"
14 #include "validcommands.h"
15 #include "validparameter.h"
16 #include "utilities.hpp"
22 bool checkInput(string);
25 GlobalData* globaldata;
26 ValidCommands* validCommand;
27 ValidParameters* validParameter;
28 void validateReadFiles();
29 // bool validCommandParameter(string, string);
30 // bool validParameterValue(string, string);
31 void validateReadDist();
32 void validateReadPhil();
33 void validateParseFiles();
34 void validateTreeFiles();
37 string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format;
38 string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund;
39 string commandName, optionText;
42 vector<string> sharedGroups;
43 // map <string, vector<string> > commandParameters;
44 /// map <string, vector<double> > intParams;