8 * Created by westcott on 1/27/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
17 class DistanceDB : public Database {
22 ~DistanceDB() { delete distCalculator; }
24 void generateDB() {} //doesn't generate a search db
25 void addSequence(Sequence);
26 string getName(int i) { return data[i].getName(); }
27 vector<int> findClosestSequences(Sequence*, int); // returns indexes of n closest sequences to query
30 int MPISend(int) {return 0;}
31 int MPIRecv(int) {return 0;}
35 vector<Sequence> data;
38 int templateSeqsLength;
41 bool isAligned(string);