1 #ifndef DISTANCECOMMAND_H
2 #define DISTANCECOMMAND_H
8 * Created by Sarah Westcott on 5/7/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
14 #include "command.hpp"
15 #include "validcalculator.h"
17 #include "sequencedb.h"
20 class DistanceCommand : public Command {
23 DistanceCommand(string);
37 string countends, phylip, fastafile, calc;
40 map<int, int> processIDS; //end line, processid
41 vector<linePair*> lines;
44 vector<string> Estimators; //holds estimators to be used
46 void appendFiles(string, string);
47 void createProcesses(string);
48 int driver(/*Dist*, SequenceDB, */int, int, string, float);