1 #ifndef DISTANCECOMMAND_H
2 #define DISTANCECOMMAND_H
8 * Created by Sarah Westcott on 5/7/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
14 #include "command.hpp"
15 #include "globaldata.hpp"
16 #include "validcalculator.h"
18 #include "sequencedb.h"
19 #include "readfasta.h"
20 #include "readnexus.h"
21 #include "readclustal.h"
22 #include "readseqsphylip.h"
27 class DistanceCommand : public Command {
31 ~DistanceCommand() {};
35 GlobalData* globaldata;
36 ValidCalculators* validCalculator;
41 string outputFileName;
46 void appendFiles(string, string);
47 int driver(Dist*, SequenceDB*, int, int, string, float);