1 #ifndef DEGAPSEQSCOMMAND_H
2 #define DEGAPSEQSCOMMAND_H
8 * Created by westcott on 6/21/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "command.hpp"
16 class DegapSeqsCommand : public Command {
18 DegapSeqsCommand(string);
21 vector<string> getRequiredParameters();
22 vector<string> getValidParameters();
23 vector<string> getRequiredFiles();
24 map<string, vector<string> > getOutputFiles() { return outputTypes; }
31 string fastafile, outputDir;
32 vector<string> outputNames;
33 vector<string> fastaFileNames;
34 map<string, vector<string> > outputTypes;