1 #ifndef COLLECTSHAREDCOMMAND_H
2 #define COLLECTSHAREDCOMMAND_H
4 * collectsharedcommand.h
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
14 #include "sharedordervector.h"
15 #include "sharedlistvector.h"
16 #include "inputdata.h"
21 #include "validcalculator.h"
22 #include "sharedutilities.h"
26 class CollectSharedCommand : public Command {
29 CollectSharedCommand(string);
30 CollectSharedCommand();
31 ~CollectSharedCommand();
32 vector<string> getRequiredParameters();
33 vector<string> getValidParameters();
34 vector<string> getRequiredFiles();
35 map<string, vector<string> > getOutputFiles() { return outputTypes; }
40 GlobalData* globaldata;
43 SharedListVector* SharedList;
45 SharedOrderVector* order;
47 ValidCalculators* validCalculator;
49 vector<Display*> cDisplays;
53 bool abort, allLines, all;
54 set<string> labels; //holds labels to be used
55 string label, calc, groups, outputDir;
56 vector<string> Estimators, Groups, outputNames;
57 map<string, vector<string> > outputTypes;