1 #ifndef CHOPSEQSCOMMAND_H
2 #define CHOPSEQSCOMMAND_H
8 * Created by westcott on 5/10/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "command.hpp"
15 #include "sequence.hpp"
17 class ChopSeqsCommand : public Command {
21 ChopSeqsCommand(string);
27 string fastafile, outputDir;
31 string getChoppedAligned(Sequence);
32 string getChoppedUnaligned(Sequence);